Internet Biology Resources
Protein Databases
Databases
- Dialign - Multiple sequence aligner by segments of homology.
- ENZYME (Swiss) - E.C. Number Search in Switzerland
- HPRD - Human Protein Reference database
- Merops - Peptidase Database
- PDB -Search - PDB Database
- PIR - The Protein Identification Resource at NBRF
- SWISS-PROT - Protien Sequence Database in Switzerland
- SWISS-SHOP - EMail Swiss-Prot Server
Homology Searching
- Psi-BLAST - NCBI - PsiBlast Server at NCBI - iterates until no more homologues are found!
- BLITZ - Rapid Detection and verification of protein sequence homology
- BLOCKS - Detection and verification of protein sequence homology
- FASTA 3.3 - EBI - European Bioinformatics Institute FASTA site. (UK)
- FASTA - Japan - Japanese FASTA server
- Motif - Search for motifs in peptides, structures. (Japan)
3D Structure of Proteins
- Chime - Software for viewing 3D structures - Free with registration
- Chime Resources - Software for viewing 3D structures - Eric Marz support site
- Cn3D Viewer - Download the Cn3D Helper Application for viewing 3D structure files
- NCBI-Structure - 3D Structure Analysis and Viewing
- OMM - Online Macromolecular Museum 3D Structure Viewing.
- PredictProtein - The PredictProtien Server Mirror at Columbia University
- PredictProtein - The PredictProtien Server at EMBL
- Protein Explorer (RasMol) - Software for viewing 3D structures on your Mac or PC screens.
Multiple Sequence Alignment (Protein)
- AllAll - Related Peptide Sequences Database
- BoxShade - Online Multiple Sequence Alignment Printing Tool
- ClustalW - Multiple Sequence Alignment Program at Baylor
- ClustalW - Multiple Sequence Alignment Program at the Pasteur Institute
- ClustalW - ClustalW - (Washington University)
- ClustalX - Download ClustalX For the Mac - Graphical interface.
Pattern Searching
Protein-Protein Interactions
- BIND - Biomolecular Interaction Network Database / Mt. Sinai - Toronto
- DIP - Database if Interacting Proteins from UCLA
- List - GenomeWeb List of Protein Interaction Databases
- PathCalling - Yeast Protien-Protein Interaction Database
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